Builds Kraken2 database
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
library_added_files:file
Files present in the /library/added/ directory, including FASTA files, masked FASTAs, and prelim_map files.
*
meta2:map
seqid2taxid_map:file
File mapping sequence IDs to taxonomy IDs, either generated or premade.
seqid2taxid.map
meta3:map
taxonomy_files:file
Files present in the /taxonomy/ directory, including nodes.dmp, names.dmp, and .accession2taxid files.
cleaning:boolean
activate or deactivate (true or false) cleaning of intermediate files
db
${prefix}:directory
contains the database that can be used to perform taxonomic classification
*/
versions
versions.yml:file
File containing software versions
versions.yml
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
$args
