September 2024 talk of the monthly meeting of the #animal-genomics special interest group. In this talk, Guillaume Devailly (INRAE, France) together with Cervin Guyomar (INRAE, France) and Sandrine Lagarrigue (Institut Agro-INRAE, France) presented Automatic visualisation of FAANG data:

The FAANG data portal offers a great curation of transcriptomic and epigenomic data from livestock species. We would like to improve FAANG data re-use by offering automatic visualisations of available datasets: sample - sample correlation heatmaps, genomic stacks at interesting features (peak center, transcription start site, CpG island, ...). We therefore need to automatically process FAANG dataset using a Nextflow pipeline and could provide uniformly processed files and QC reports as useful artifacts. While an initial protoype is available, help is needed to sustain this development.
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